Dr. Margaret Oakley Dayhoff -- Publications

  1. 1949. Dayhoff, M. O. and G. E. Kimball "Punched Card Calculation of Resonance Energies" J. Chem. Phys. 17, 706-717, Ph.D. Thesis, Columbia University, Graduate School of Chemistry.
  2. 1951. MacInnes, D. A., M. O. Dayhoff and B. Roger Ray "A Magnetic Float Method for Determining the Densities of Solutions" Rev. Sci. Instr. 22 Num 8 pp. 642-646.
  3. 1952. MacInnes, D. A. and M. O. Dayhoff, "A study of iodide-iodine solutions with the emf centrifuge" Jour. Chem. Physics 20, 1034-1038.
  4. 1952. Dayhoff, M. O., G. E. Perlman and D. A. MacInnes,"Partial specific volumes, in aqueous solution, of three proteins", Jour. Am. Chem. Society 74, p. 2515.
  5. 1962. Dayhoff, M. O. and R. S. Ledley, "Comprotein: A Computer Program to Aid Primary Protein Structure Determination." In Proceedings of the Fall Joint Computer Conference, 1962, 262-274. Santa Monica, CA: American Federation of Information Processing Societies, 1962.
  6. 1962. - Related Internal Report referred to in line above, "Sequencing of Amino Acids in Proteins Using Computer Aids", report # 62072/8710, NBRF, July 1962
  7. 1963. Dayhoff, M. O. "A contour-map program for X-Ray Crystallography" Comm. Ass. Comput. Mach. 6, 620-622.
  8. 1964. Dayhoff, M. O. "Computer aids to protein sequence determination" J. Theor. Biol. 8, 97- 112.
  9. 1964. Dayhoff, M. O. , E. R. Lippincot and R. V. Eck. "Thermodynamic Equilibria in prebiological atmospheres" Science 146, 1461-1464.
  10. 1966. Eck, R. V. and M. O. Dayhoff. "Evolution of the structure of ferredoxin based on living relics of primitive amino acid sequences." Science 152, 363-366.
  11. 1966. Eck, R. V. , E. R. Lippincott, M. O. Dayhoff, and Y. T. Pratt. "Thermodynamic equilibrium and the inorganic origin of organic compounds." Science 153, 628-633.
  12. 1967. Dayhoff, M. O., E. R. Lippincot, R. V. Eck, and G. Nagarajan, " Thermodynamic equilibrium in prebiological atmospheres of C, H, O, N, P, S, and Cl" National Aeronautics and space administration publication NASA SP-3040, Washington, DC.
  13. 1967. Lippincot, E. R., R. V. Eck, M. O. Dayhoff, and C. Sagan. "Thermodynamic Equilibria in planetary atmospheres." Astrophys. J. 147, 753-764.
  14. 1967. Sagan, C. E., E. R. Lippincott, M. O. Dayhoff and R. V. Eck. "Organic molecules and the coloration of Jupiter." Nature 213, 273-274.
  15. 1969. Dayhoff, M. O. "Computer analysis of protein evolution" Sci. Am. 221, 86-95. This article reprinted in "Facets of Genetics", Readings from Scientific American", by Srb, Owen and Edgar, 1969.
  16. 1970 M. O. Dayhoff and Eck, R. V. MASSPEC: a computer program for complete sequence analysis of large proteins from mass spectrometry data of a single sample. PMID: 5524587[PubMed - index for MEDLINE].
  17. 1970 L. T. Hunt and Dayhoff, M. O. The Occurrence in proteins of the tripeptides Asn-X-Ser and Asn-X-Thr and of bound carbohydrate Biochem Biophys Res Commun 1970 May 22; 39(4):757-65.
  18. 1971 Dayhoff, M. O., Evolution of proteins in Molecular Evolution I: Chemical Evolution and the Origin of Life, R. Buvet and Cyril Ponnamperuma, Editors, North-Holland, Amsterdam, 1971, pp 392-419.
  19. 1972 L. T. Hunt and Dayhoff, M. O. The Origen of the Genetic Material in the Abnormally Long Human Hemoglobin and Chains, Biochem Biophys Res Commun May 26;47(4):699-704
  20. 1972 P. J. McLaughlin, L. T. Hunt and M. O. Dayhoff Techniques for Determining Protein Sequence Evolution Applied to Primates, Journal of Human Evolution, 1, 565-578
  21. 1972 Dayhoff, M. O., Eck, R. V. and Park, C. M. Atlas of Protein Sequence and Structure, Vol. 5, pp 75-84, NBRF.
  22. 1973 W. C. Barker and M. O. Dayhoff Computer Studies of Distantly Related Protein Sequences in Biophysical Society Abstracts 2/28/73-3/2/73
  23. 1973 McLaughlin, P. J. and Dayhoff, M. O., Eukaryote Evolution: A View Based on Cytochrome C Sequence Data, Journal of Molecular Evolution, Vol 2, pp 99-116, 1973.
  24. 1974 Lois T. Hunt, Winona C. Barker and Margaret O. Dayhoff Epidermal Growth Factor: Internal Duplication and Probable Relationship to Pancreatic Secretory Trypsin Inhibitor Biochemical and Biophysical Research Communications ,60 No 3
  25. 1974 M. O. Dayhoff, W. C. Barker, and P. J. McLaughlin. Inferences from Protein and Nucleic Acid Sequences: Early Molecular Evolution, Divergence of Kingdoms and Rates of Change. Origins of Life 5, 311-330
  26. 1974 M. O. Dayhoff Computer analysis of protein sequences in Federatiom Proceedings Vol 33 No 12 pp 2314,2316 Dec
  27. 1974 L. T. Hunt and M. O. Dayhoff Table of Abnormal Human Globins with References in Annals of the New York Academy of Sciences Vol 241, pp 722-735 Nov 29, 1974.
  28. 1974 W. C. Barker, L. T. Hunt and M. O. Dayhoff Gene Duplication in the Evolution of Complex Physiological Systems of Vertebrates in Federation Proceedings 33(5): 1547, 1974
  29. 1974 Dayhoff, M.O.,Barker,W.C.,McLaughlin,P.J., Origins of Life, vol. 5, p 311, 1974. Inferences from Protein and Nucleic Acid Sequences: Early molecular evolution, Divergence of Kingdoms and Rates of Change.
  30. 1974 E. C. Alvord, Jr, S. Hruby, R. Petersen, W. C. Barker, and M. O. Dayhoff. Antigenic Analysis of Peptide Fragments of Myelin Membrane Encephalitogenic Protein. Federation Proceedings 33(31): 786, 1974.
  31. 1974 M. O. Dayhoff, W. C. Barker and L. T. Hunt Protein Superfamilies: Known Structures and Potential Number of Groups in Federation Proceedings 33(5): 1548, 1974
  32. 1975 M. O. Dayhoff Computer analysis of protein sequences in Computers in Life Science Research, Siler and Lindberg, Eds. 9-14. Plenum Press. Appears identical to above.
  33. 1975 W. C. Barker and M. O. Dayhoff Gene Duplications in the Evolution of Muscle Proteins in Biophysical Journal 15:121a, 1975
  34. 1975 M. O. Dayhoff, P. J. McLaughlin, W. C. Barker, and L. T. Hunt. Evolution of Sequences within Protein Superfamilies, die Naturwissenschaften 62, 154-161 (1975), 154-161.
  35. 1975 R. E. Dayhoff, L. T. Hunt, and M. O. Dayhoff Protein Sequence Relationships from Amino Acid Compositions. Biophysical Journal 15:294a, 1975
  36. 1975 Dayhoff, M. O. - The Computer as an Aid to the Understanding of Biological Structure, Function and Evolution, Codata Bulletin, March 1975{sec M-6}.
  37. 1975 Hunt, L. T., Barker, W. C., Schwartz, R. M.,Gantt, M. J., Dayhoff, M. O., The Evolution of Biological Kingdoms: History and Mechanisms, Federation Proceedings 34(3):666 March 1975.
  38. 1975 Schwartz, Robert M., Barker, W.C., and Margaret O. Dayhoff. Early Events in the Emergence of Eukaryotes and Prokaryotes Inferred from RNA and Protein SequencesSecond College Park Colloquium on Chemical Evolution Univ. of Maryland, 10/29-11/1, 1975.
  39. 1976 M. O. Dayhoff, W. C. Barker, R. M. Schwartz, B. C. Orcutt, and L. T. Hunt. Data Base for Protein Sequences, AFIPS National Computer Conference Proceedings-Vol 45, 261-266 with 22 references. (1976)
  40. 1976 W. C. Barker and M. O. Dayhoff Amino Acid Sequences of Immunoglobulins in Handbook of Biochemistry and Molecular Biology, 3rd Edition, Proteins--Vol III., G. D. Fasman, editor, CRC Press 1976, (with 62 references). pp 403-420
  41. 1976 W. C. Barker and M. O. Dayhoff Active Site Peptides in Handbook of Biochemistry and Molecular Biology, 3rd Ed., Proteins, Vol III, ed. G. D. Fasman, pp 186-191, CRC Press, 1976. #21J Material pp 186-191 includes 122 references.
  42. 1976 Margaret O. Dayhoff The origin and evolution of protein superfamilies, Federation Proceedings Vol 35,No 10, pp 2132-2138. Aug 1976. with 25 references.
  43. 1976 M. O. Dayhoff, Dayhoff. R. E., and L. T. Hunt, , vol. 5 Suppl 2. Atlas pp 301-310, NBRF, Washington, D.C.
  44. 1976 Fred D. Ledley, Brian R. Mullin, George Lee, Salvatore M. Aloj, Peter H. Fishman, Lois T. Hunt, Margaret O. Dayhoff, Leonard D. Kohn. Sequence Similarity between Clolera Toxin and Glycoprotein Hormones: Implications for Structure Activity Relationship and Mechanism of Action, Biochemical and Biophysical Research Communications, Vol 69, No. 4, 1976
  45. 1976 M. O. Dayhoff, R. M. Schwartz, W. C. Barker, and B. C. Orcutt. Improved Computer Methods to Detect Distant Relationships between Protein Sequences, Biophysical Journal 16: 9a, Feb 1976.
  46. 1976 R. M. Schwartz, M. O. Dayhoff The Origin of Eukaryote Organelles Inferred from Protein and Nucleic Acid Sequences Biophysical Journal 16: 229a, Feb 1976.
  47. 1976 Margaret O. Dayhoff, Lois T. Hunt, Winona C. Barker, Robert M. Schwartz and Bruce C. Orcutt. Estimation of the Structure of the Proteins of all Living Organisms. Abstracts, Fifth International Codata Conference, Boulder, CO, 6/27-7/1/1976, Codata Bulletin, No. 18, p. 28, 1976
  48. 1976 Sequence Similarity between cholera toxin and glycoprotein hormones: implications for structure activity relationship and mechanism of action, F. D. Ledley, B. R. Mullen, G. Lee, S. M. Aloj, P. H. Fishman, L. T. Hunt, M. O. Dayhoff, L. D. Kohn, Biochem. Biophys. Res. Commun. 69: 852-859, 1976.
  49. 1976 Data base for protein sequences, M. O. Dayhoff, W. C. Barker, R. M. Schwartz, B. C. Orcutt, L. T. Hunt, AFIPS Conf. Proc. 45: 261-266, 1976.
  50. 1976 W. C. Barker, M. O. Dayhoff, Amino Acid Sequences of Immunoglobulins, in: Handbook of Biochemistry and Molecular Biology, 3rd Ed., Proteins, Volume III, G. D. Fasman, ed., pp. 186-191, CRC Press, Cleveland, 1976.
  51. 1976 W. C. Barker and M. O. Dayhoff, Active Site Peptides, in: Handbook of Biochemistry and Molecular Biology, 3rd ed., Proteins, Volume III, G. D. Fassman, ed., pp186-191, CRC Press, Cleveland.
  52. 1976 M. O. Dayhoff The Origin and Evolution of Protein Superfamilies, Fed. Proc. 35: 2132-2138.
  53. 1977 R. M. Schwartz and M. O. Dayhoff The Point Mutation Process in Proteins, Proc. 2nd ISSOL and 5th ICOL Meeting, Japan, p. 457-469.
  54. 1977 M. O. Dayhoff and R. M. Schwartz, Evolution of Early Life Inferred From Protein and Ribonucleic Acid Sequences, Proc. 2nd ISSOL and 5th ICOL Meeting, Japan, p. 547-560.
  55. 1977 L. T. Hunt and M. O. Dayhoff, Amino-terminal sequence identity of ubiquitin and the non-histone component of nuclear protein A24, Biochem. Biophys. Res. Commun. 74: 650-655.
  56. 1977 W. C. Barker and M. O. Dayhoff, Evolution of Lipoproteins deduced from Protein Sequence Data, Comp. Biochem. Physiol 57B: 309-315.
  57. 1977 Evolutionary Relationships among Calcium-binding Proteins, W. C. Barker, L. K. Ketcham, M. O. Dayhoff in : Calcium-Binding Proteins and Calcium Function, R. H. Wasserman et al., eds, pp 73-75, Elsevier North-Holland, Amsterdam.
  58. 1977 Estimation of the Structure of the Proteins of all Living Organisms, M. O. Dayhoff, L. T. Hunt, W. C. Barker, R. M. Schwartz, B. C. Orcutt, in:Proceedings of the Fifth Biennial International CODATA Conference, B. Dreyfus, Ed., pp 349-354, Pergamon Press, Oxford and New York.
  59. 1978 R. M. Schwartz and M. O. Dayhoff Origins of Prokaryotes, Eukaryotes, Mitochrondria, and Chloroplasts, Science 199: 395-403.
  60. 1978 W. C. Barker, L. K. Ketcham, M. O. Dayhoff A Comprehensive Examination of Protein Sequences for Evidence of Internal Gene Duplication, J. Mol. Evol. 10:265-281.
  61. 1978 M. O. Dayhoff, R. M. Schwartz, Evolution of Early Life Inferred from Protein and Ribonucleic Acid Sequences, in: Origin of Life: Proceedings of the Second ISSOL Meeting, the fifth ICOL Meeting, H. Noda, Ed, pp 547-560 Center for Academic Publications Japan / Japan Scientific Societies Press, Tokyo.
  62. 1978 The Point Mutation Process in Proteins, R. M. Schwartz and M. O. Dayhoff, in: Origin of Life: Proceedings of the Second ISSOL Meeting, the Fifth ICOL Meeting, H. Noda, ed, pp 457-469. Center for Academic Publications, Japan / Japan Scientific Societies Press, Tokyo.
  63. 1978 Detection of Distant Relationships Based on Point Mutation Data, R. M. Schwartz and M. O. Dayhoff, in: Evolution of Protein Molecules, H. Matsubara and T. Yamanaka, eds., pp 1-16, Center for Academic Publications Japan / Japan Scientific Societies Press, Tokyo.
  64. 1978 Evolution of Prokaryotes and Eukaryotes Inferred from Sequences, M. O. Dayhoff, and R. M. Schwartz, in: Evolution of Protein Molecules, by H. Matsubara and T. Yamanaka, eds., pp. 323-342, Center for Academic Publications Japan / Japan Scientific Societies Press, Tokyo.
  65. 1978 An Outline of Biological Evolution Based on Macromolecular Sequences, R. M. Schwartz and M. O. Dayhoff in: Comparative Planetology, C. Ponnamperuma, ed., pp 225-242, Academic Press, New York.
  66. 1979 Evolution of Homologous Physiological Mechanisms based on Protein Sequence Data, W. C. Barker and M. O. Dayhoff Comp. Biochem. Physiol. 62B: 1-5.
  67. 1979 Methods for Identifying Proteins by Using Partial Sequences, M. O. Dayhoff and B. C. Orcutt, Proc Nat. Acad. Sci. USA 76:2170-2174.
  68. 1979 Protein and Nucleic Acid Sequence Data and Phylogeny, R. M. Schwartz and M. O. Dayhoff, Science 205: 1036-1039. (Exchange of technical comments with Vincent Demoulin)
  69. 1979 Structural and Functional Similarities Among Hormones and Active Peptides from Distantly Related Eukaryotes, L. T. Hunt and M. O. Dayhoff, in: Peptides: Structure and Biological Function (Proceedings of the Sixth American Peptide Symposium), E. Gross and J. Meienhofer, eds., pp 757-760, Pierce Chemical Co., Rockford, IL.
  70. 1979 Role of Gene Duplication in the Evolution of Complex Physiological Mechanisms: an Assessment based on Protein Sequence Data, W. C. Barker and M. O. Dayhoff in Stadler Genetics Symposia, vol 11, G. Redei, ed., pp 125-144, Univ of Missouri Agricultural Experiment Station, Columbia, MO.
  71. 1979 Young, C. L., W. C. Barker, C. M. Tomascelli and M. O. Dayhoff in Atlas of Protein Sequence and Structure M. O. Dayhoff, Ed. Vol 5 Supplement 3 pp 73-93.
  72. 1980 Nucleic Acid Sequence Bank, M. O. Dayhoff, R. M. Schwartz, H. R. Chen, L. T. Hunt, W. C. Barker, and B. C. Orcutt, Science 209: 1182.
  73. 1980 Origins of Immunoglobulin Heavy Chain Domains, W. C. Barker, L. K. Ketcham, and M. O. Dayhoff, J. Mol. Evolution 15: 113-127.
  74. 1980 M. O. Dayhoff, Schwartz, R. M., Chen, H. R. Hunt, L. T., Barker, W. C., Orcutt, B. C., A Demonstration Database Project, Science, 209, 1182 (1980). #27
  75. 1980 Evolutionary and Functional Relationships of Homologous Physiological Mechanisms, W. C. Barker and M. O. Dayhoff, Bioscience 30: 593-600.
  76. 1980 Evolutionary Studies of Immunoglobulin Protein and Nucleic Acid Sequences, W. C. Barker and M. O. Dayhoff, in: Protides(sic?) of the Biological Fluids, Proceedings of the 28th Colloquium, H. Peeters, ed., pp. 17-22, Pergamon Press, Oxford.
  77. 1980 Prokaryote Evolution and the Symbiotic Origin of Eukaryotes, M. O. Dayhoff and R. M. Schwartz, in: Endocytobiology, W. Schwemmler and H. E. A. Schenk, eds., pp 63-83, Walter de Gruyter, Berlin.
  78. 1980 Banking DNA Sequences, M. O. Dayhoff, R. M. Schwartz, H. R. Chen, L. T. Hunt, B. C. Orcutt, and W. C. Barker, Nature 286: 326.
  79. 1980 A Surprising New Protein Superfamily containing Ovalbumin, Antithrombin-III, and Alpha-proteinase Inhibitor, L. T. Hunt and M. O. Dayhoff Biochem. Biophys. Res. Commun. 95:864-871.
  80. 1980 Early Biological Evolution derived from Chemical Structures, M. O. Dayhoff and R. M. Schwartz, in: Biological Chemistry of Organelle Formation, T. Bucher, W. Sebald, and H. weiss, eds., pp 71-86, Springer-Verlag, New York.
  81. 1981 Evidence on the Origin of Eukaryotic Mitochondria from Protein and Nucleic acid Sequences, M. O. Dayhoff and R. M. Schwartz, Ann. New York Acad. Sci. 361: 92-104.
  82. 1981 Chloroplast Origins: Inferences from Protein and Nucleic Acid Sequences, R. M. Schwartz and M. O. Dayhoff, Ann. N. Y. Acad Sci. 361: 260-272.
  83. 1981 The Evolution of Blue-greens and the origins of Chloroplasts, R. M. Schwartz and M. O. Dayhoff, in: Origin of Life, Y. Wolman, ed., pp 551-558, Reidel, Dordrecht, The Netherlands.
  84. 1981 The Evolution of the Rhodospirillaceae and the mitochondria: a view based on sequence data, M. O. Dayhoff and R. M. Schwartz, in: Origin of Life, Y. Wolman, ed. pp 559-566, Reidel, Dordrecht, The Netherlands.
  85. 1981 Phylogenetic Sequence of Metabolic Pathways in Precambrian cellular life, J. Barnabas, R. M. Schwartz, and M. O. Dayhoff, in: Origin of Life, Y. Wolman, ed., pp 521-528, Reidel, Dordrecht, The Netherlands.
  86. 1981 Names for Proteins, M. O. Dayhoff, L. T. Hunt, W. C. Barker, B. C. Orcutt, L.-S. Yeh, H. R. Chen, and D. G. George, Nature 293: 594.
  87. 1982 Evolution of Chromosomal Proteins, L. T. Hunt and M. O. Dayhoff, in: Macromolecular Sequences in Systematics and Evolutionary Biology, M. Goodman, ed., pp 193-239, Plenum Press, New York and London. (Added 11/9/2001)
  88. 1982 Nucleic Acid Sequence Database, M. O. Dayhoff, R. M. Schwartz, H. R. Chen, W. C. Barker, L. T. Hunt, B. C. Orcutt, DNA 1: 51-58.
  89. 1982 Data Bank, M. O. Dayhoff, R. M. Schwartz, H. R. Chen, L. T. Hunt, W. C. Barker, B. C. Orcutt, Nature 290: 8.
  90. 1982 Nucleic Acid Sequence Database Computer System, B. C. Orcutt, D. G. George, J. A. Frederickson, and M. O. Dayhoff Nucl. Acids Res. 10, 157-174.
  91. 1982 Viral src gene products are related to the catalytic chain of mamalian cAMP-dependant protein kinase, W. C. Barker and M. O. Dayhoff, Proc. Nat. Acad. Sci. USA 79: 2836-2839.
  92. 1982 Sequence Bank Update, Nucleic Acid Sequence Database II, H. R. Chen, M. O. Dayhoff, W. C. Barker, L.T. Hunt, L.-S. Yeh D. G. George, and B. C. Orcutt, DNA 1: 103-108.
  93. 1982 Evolution of Major Metabolic Innovations in the Precambrian, John Barnabas, R. M. Schwartz, and M. O. Dayhoff. Origins Life, 12: 81-91.
  94. 1982 Nucleic Acid Sequence Database III, H. R. Chen, M. O. Dayhoff, W. C. Barker, L. T. Hunt, L.-S. Yeh, D. G. George, B. C. Orcutt, DNA 1: 273-307.
  95. 1982 Nucleic Acid Sequence Database IV, H. R. Chen, M. O. Dayhoff, W. C. Barker, L. T. Hunt, L.-S. Yeh, D. G. George, D. C. Orcutt, DNA 1: 365-374.
  96. 1982 Ancestral Relationships of Protein and Peptide Hormones, L. T. Hunt and W. C. Barker, and M. O. Dayhoff, J. Cell Biol. 95: 199a.
  97. 1982 The Chemical Structure of DNA Sequence Signals for RNA Transcription, D. G. George and M. O. Dayhoff, Origins of Life 12(3):311-9.
  98. 1983 Establishing Homologies in Protein Sequences, M. O. Dayhoff, W. C. Barker, and L. T. Hunt, Methods Enzymol. 91: 524-545.
  99. 1983 Protein and Nucleic Acid Sequence Database Systems, B. C. Orcutt, D. G. George, and M. O. Dayhoff, Annu. Rev. Biophys. Bioeng. 12: 419-441.
  100. 1983 Protein Identification through active site patterns, M. O. Dayhoff, L.-S. Yeh, and W. C. Barker, Biophys. J., in press,
  101. 1983 Sequence Evidence for the Symbiotic Origins of Chloroplasts and Mitochrondria, D. G. George, and M. O. Dayhoff, Second International Colloquium on Endocytobiology, Tuebingen, 10-15 April.
  102. 1983 Evolutionary Connections of Biological Kingdoms based on Protein and Nucleic Acid Sequence Evidence, M. O. Dayhoff, Precambrian Res., 299-318.
  103. 1983 Nucleic Acid Sequence Database V: Completely Sequences Genomes, H. R. Chen, M. O. Dayhoff, W. C. Barker, L. T. Hunt, L. S. Yeh, D. G. George, B. C. Orcutt. DNA 1983;2(4): 275-280.
  104. 1984 Evolution of prokaryote and eukaryote lines inferred from sequence evidence, Hunt, L.T., George, D. G., Yeh, L. S. M. O. Dayhoff Orig. Life, 1984; 14(1-4): 657-64.
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